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1.

Personalized microbiome-driven effects of non-nutritive sweeteners on human glucose tolerance.

Suez, Jotham; Cohen, Yotam; Valdés-Mas, Rafael; Mor, Uria; Dori-Bachash, Mally; Federici, Sara; Zmora, Niv; Leshem, Avner; Heinemann, Melina; Linevsky, Raquel; Zur, Maya; Ben-Zeev Brik, Rotem; Bukimer, Aurelie; Eliyahu-Miller, Shimrit; Metz, Alona; Fischbein, Ruthy; Sharov, Olga; Malitsky, Sergey; Itkin, Maxim; Stettner, Noa; Harmelin, Alon; Shapiro, Hagit; Stein-Thoeringer, Christoph K; Segal, Eran; Elinav, Eran.

Cell ; 185(18): 3307-3328.e19, 2022 09 01.

Article in English | MEDLINE | ID: mdl-35987213

2.

Epithelial Nlrp10 inflammasome mediates protection against intestinal autoinflammation.

Zheng, Danping; Mohapatra, Gayatree; Kern, Lara; He, Yiming; Shmueli, Merav D; Valdés-Mas, Rafael; Kolodziejczyk, Aleksandra A; Próchnicki, Tomasz; Vasconcelos, Matilde B; Schorr, Lena; Hertel, Franziska; Lee, Ye Seul; Rufino, Miguel Camacho; Ceddaha, Emmanuelle; Shimshy, Sandy; Hodgetts, Ryan James; Dori-Bachash, Mally; Kleimeyer, Christian; Goldenberg, Kim; Heinemann, Melina; Stettner, Noa; Harmelin, Alon; Shapiro, Hagit; Puschhof, Jens; Chen, Minhu; Flavell, Richard A; Latz, Eicke; Merbl, Yifat; Abdeen, Suhaib K; Elinav, Eran.

Nat Immunol ; 24(4): 585-594, 2023 04.

Article in English | MEDLINE | ID: mdl-36941399

3.

Short-term dietary changes can result in mucosal and systemic immune depression.

Siracusa, Francesco; Schaltenberg, Nicola; Kumar, Yogesh; Lesker, Till R; Steglich, Babett; Liwinski, Timur; Cortesi, Filippo; Frommann, Laura; Diercks, Björn-Phillip; Bönisch, Friedericke; Fischer, Alexander W; Scognamiglio, Pasquale; Pauly, Mira J; Casar, Christian; Cohen, Yotam; Pelczar, Penelope; Agalioti, Theodora; Delfs, Flemming; Worthmann, Anna; Wahib, Ramez; Jagemann, Bettina; Mittrücker, Hans-Willi; Kretz, Oliver; Guse, Andreas H; Izbicki, Jakob R; Lassen, Kara G; Strowig, Till; Schweizer, Michaela; Villablanca, Eduardo J; Elinav, Eran; Huber, Samuel; Heeren, Joerg; Gagliani, Nicola.

Nat Immunol ; 24(9): 1473-1486, 2023 09.

Article in English | MEDLINE | ID: mdl-37580603

4.

Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome.

Mars, Ruben A T; Yang, Yi; Ward, Tonya; Houtti, Mo; Priya, Sambhawa; Lekatz, Heather R; Tang, Xiaojia; Sun, Zhifu; Kalari, Krishna R; Korem, Tal; Bhattarai, Yogesh; Zheng, Tenghao; Bar, Noam; Frost, Gary; Johnson, Abigail J; van Treuren, Will; Han, Shuo; Ordog, Tamas; Grover, Madhusudan; Sonnenburg, Justin; D'Amato, Mauro; Camilleri, Michael; Elinav, Eran; Segal, Eran; Blekhman, Ran; Farrugia, Gianrico; Swann, Jonathan R; Knights, Dan; Kashyap, Purna C.

Cell ; 182(6): 1460-1473.e17, 2020 09 17.

Article in English | MEDLINE | ID: mdl-32916129

5.

Diet Diurnally Regulates Small Intestinal Microbiome-Epithelial-Immune Homeostasis and Enteritis.

Tuganbaev, Timur; Mor, Uria; Bashiardes, Stavros; Liwinski, Timur; Nobs, Samuel Philip; Leshem, Avner; Dori-Bachash, Mally; Thaiss, Christoph A; Pinker, Elisha Y; Ratiner, Karina; Adlung, Lorenz; Federici, Sara; Kleimeyer, Christian; Moresi, Claudia; Yamada, Takahiro; Cohen, Yotam; Zhang, Xiao; Massalha, Hassan; Massasa, Efi; Kuperman, Yael; Koni, Pandelakis A; Harmelin, Alon; Gao, Nan; Itzkovitz, Shalev; Honda, Kenya; Shapiro, Hagit; Elinav, Eran.

Cell ; 182(6): 1441-1459.e21, 2020 09 17.

Article in English | MEDLINE | ID: mdl-32888430

6.

Lipid-Associated Macrophages Control Metabolic Homeostasis in a Trem2-Dependent Manner.

Jaitin, Diego Adhemar; Adlung, Lorenz; Thaiss, Christoph A; Weiner, Assaf; Li, Baoguo; Descamps, Hélène; Lundgren, Patrick; Bleriot, Camille; Liu, Zhaoyuan; Deczkowska, Aleksandra; Keren-Shaul, Hadas; David, Eyal; Zmora, Niv; Eldar, Shai Meron; Lubezky, Nir; Shibolet, Oren; Hill, David A; Lazar, Mitchell A; Colonna, Marco; Ginhoux, Florent; Shapiro, Hagit; Elinav, Eran; Amit, Ido.

Cell ; 178(3): 686-698.e14, 2019 07 25.

Article in English | MEDLINE | ID: mdl-31257031

7.

Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features.

Zmora, Niv; Zilberman-Schapira, Gili; Suez, Jotham; Mor, Uria; Dori-Bachash, Mally; Bashiardes, Stavros; Kotler, Eran; Zur, Maya; Regev-Lehavi, Dana; Brik, Rotem Ben-Zeev; Federici, Sara; Cohen, Yotam; Linevsky, Raquel; Rothschild, Daphna; Moor, Andreas E; Ben-Moshe, Shani; Harmelin, Alon; Itzkovitz, Shalev; Maharshak, Nitsan; Shibolet, Oren; Shapiro, Hagit; Pevsner-Fischer, Meirav; Sharon, Itai; Halpern, Zamir; Segal, Eran; Elinav, Eran.

Cell ; 174(6): 1388-1405.e21, 2018 09 06.

Article in English | MEDLINE | ID: mdl-30193112

8.

Post-Antibiotic Gut Mucosal Microbiome Reconstitution Is Impaired by Probiotics and Improved by Autologous FMT.

Suez, Jotham; Zmora, Niv; Zilberman-Schapira, Gili; Mor, Uria; Dori-Bachash, Mally; Bashiardes, Stavros; Zur, Maya; Regev-Lehavi, Dana; Ben-Zeev Brik, Rotem; Federici, Sara; Horn, Max; Cohen, Yotam; Moor, Andreas E; Zeevi, David; Korem, Tal; Kotler, Eran; Harmelin, Alon; Itzkovitz, Shalev; Maharshak, Nitsan; Shibolet, Oren; Pevsner-Fischer, Meirav; Shapiro, Hagit; Sharon, Itai; Halpern, Zamir; Segal, Eran; Elinav, Eran.

Cell ; 174(6): 1406-1423.e16, 2018 09 06.

Article in English | MEDLINE | ID: mdl-30193113

9.

Our Gut Microbiome: The Evolving Inner Self.

Kundu, Parag; Blacher, Eran; Elinav, Eran; Pettersson, Sven.

Cell ; 171(7): 1481-1493, 2017 Dec 14.

Article in English | MEDLINE | ID: mdl-29245010

10.

A microbial iron fist to fight tumors.

Nobs, Samuel P; Elinav, Eran.

Nat Immunol ; 25(5): 720-721, 2024 May.

Article in English | MEDLINE | ID: mdl-38664584

11.

Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations.

Thaiss, Christoph A; Levy, Maayan; Korem, Tal; Dohnalová, Lenka; Shapiro, Hagit; Jaitin, Diego A; David, Eyal; Winter, Deborah R; Gury-BenAri, Meital; Tatirovsky, Evgeny; Tuganbaev, Timur; Federici, Sara; Zmora, Niv; Zeevi, David; Dori-Bachash, Mally; Pevsner-Fischer, Meirav; Kartvelishvily, Elena; Brandis, Alexander; Harmelin, Alon; Shibolet, Oren; Halpern, Zamir; Honda, Kenya; Amit, Ido; Segal, Eran; Elinav, Eran.

Cell ; 167(6): 1495-1510.e12, 2016 Dec 01.

Article in English | MEDLINE | ID: mdl-27912059

12.

The Spectrum and Regulatory Landscape of Intestinal Innate Lymphoid Cells Are Shaped by the Microbiome.

Gury-BenAri, Meital; Thaiss, Christoph A; Serafini, Nicolas; Winter, Deborah R; Giladi, Amir; Lara-Astiaso, David; Levy, Maayan; Salame, Tomer Meir; Weiner, Assaf; David, Eyal; Shapiro, Hagit; Dori-Bachash, Mally; Pevsner-Fischer, Meirav; Lorenzo-Vivas, Erika; Keren-Shaul, Hadas; Paul, Franziska; Harmelin, Alon; Eberl, Gérard; Itzkovitz, Shalev; Tanay, Amos; Di Santo, James P; Elinav, Eran; Amit, Ido.

Cell ; 166(5): 1231-1246.e13, 2016 Aug 25.

Article in English | MEDLINE | ID: mdl-27545347

13.

Epithelial IL-18 Equilibrium Controls Barrier Function in Colitis.

Nowarski, Roni; Jackson, Ruaidhrí; Gagliani, Nicola; de Zoete, Marcel R; Palm, Noah W; Bailis, Will; Low, Jun Siong; Harman, Christian C D; Graham, Morven; Elinav, Eran; Flavell, Richard A.

Cell ; 163(6): 1444-56, 2015 Dec 03.

Article in English | MEDLINE | ID: mdl-26638073

14.

Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome.

Mars, Ruben A T; Yang, Yi; Ward, Tonya; Houtti, Mo; Priya, Sambhawa; Lekatz, Heather R; Tang, Xiaojia; Sun, Zhifu; Kalari, Krishna R; Korem, Tal; Bhattarai, Yogesh; Zheng, Tenghao; Bar, Noam; Frost, Gary; Johnson, Abigail J; van Treuren, Will; Han, Shuo; Ordog, Tamas; Grover, Madhusudan; Sonnenburg, Justin; D'Amato, Mauro; Camilleri, Michael; Elinav, Eran; Segal, Eran; Blekhman, Ran; Farrugia, Gianrico; Swann, Jonathan R; Knights, Dan; Kashyap, Purna C.

Cell ; 183(4): 1137-1140, 2020 Nov 12.

Article in English | MEDLINE | ID: mdl-33186523

15.

Personalized Nutrition by Prediction of Glycemic Responses.

Zeevi, David; Korem, Tal; Zmora, Niv; Israeli, David; Rothschild, Daphna; Weinberger, Adina; Ben-Yacov, Orly; Lador, Dar; Avnit-Sagi, Tali; Lotan-Pompan, Maya; Suez, Jotham; Mahdi, Jemal Ali; Matot, Elad; Malka, Gal; Kosower, Noa; Rein, Michal; Zilberman-Schapira, Gili; Dohnalová, Lenka; Pevsner-Fischer, Meirav; Bikovsky, Rony; Halpern, Zamir; Elinav, Eran; Segal, Eran.

Cell ; 163(5): 1079-1094, 2015 Nov 19.

Article in English | MEDLINE | ID: mdl-26590418

16.

Microbiota-Modulated Metabolites Shape the Intestinal Microenvironment by Regulating NLRP6 Inflammasome Signaling.

Levy, Maayan; Thaiss, Christoph A; Zeevi, David; Dohnalová, Lenka; Zilberman-Schapira, Gili; Mahdi, Jemal Ali; David, Eyal; Savidor, Alon; Korem, Tal; Herzig, Yonatan; Pevsner-Fischer, Meirav; Shapiro, Hagit; Christ, Anette; Harmelin, Alon; Halpern, Zamir; Latz, Eicke; Flavell, Richard A; Amit, Ido; Segal, Eran; Elinav, Eran.

Cell ; 163(6): 1428-43, 2015 Dec 03.

Article in English | MEDLINE | ID: mdl-26638072

17.

The fire within: microbes inflame tumors.

Gagliani, Nicola; Hu, Bo; Huber, Samuel; Elinav, Eran; Flavell, Richard A.

Cell ; 157(4): 776-83, 2014 May 08.

Article in English | MEDLINE | ID: mdl-24813605

18.

Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis.

Thaiss, Christoph A; Zeevi, David; Levy, Maayan; Zilberman-Schapira, Gili; Suez, Jotham; Tengeler, Anouk C; Abramson, Lior; Katz, Meirav N; Korem, Tal; Zmora, Niv; Kuperman, Yael; Biton, Inbal; Gilad, Shlomit; Harmelin, Alon; Shapiro, Hagit; Halpern, Zamir; Segal, Eran; Elinav, Eran.

Cell ; 159(3): 514-29, 2014 Oct 23.

Article in English | MEDLINE | ID: mdl-25417104

19.

NLRP6 inflammasome orchestrates the colonic host-microbial interface by regulating goblet cell mucus secretion.

Wlodarska, Marta; Thaiss, Christoph A; Nowarski, Roni; Henao-Mejia, Jorge; Zhang, Jian-Ping; Brown, Eric M; Frankel, Gad; Levy, Maayan; Katz, Meirav N; Philbrick, William M; Elinav, Eran; Finlay, B Brett; Flavell, Richard A.

Cell ; 156(5): 1045-59, 2014 Feb 27.

Article in English | MEDLINE | ID: mdl-24581500

20.

Lung dendritic-cell metabolism underlies susceptibility to viral infection in diabetes.

Nobs, Samuel Philip; Kolodziejczyk, Aleksandra A; Adler, Lital; Horesh, Nir; Botscharnikow, Christine; Herzog, Ella; Mohapatra, Gayatree; Hejndorf, Sophia; Hodgetts, Ryan-James; Spivak, Igor; Schorr, Lena; Fluhr, Leviel; Kviatcovsky, Denise; Zacharia, Anish; Njuki, Suzanne; Barasch, Dinorah; Stettner, Noa; Dori-Bachash, Mally; Harmelin, Alon; Brandis, Alexander; Mehlman, Tevie; Erez, Ayelet; He, Yiming; Ferrini, Sara; Puschhof, Jens; Shapiro, Hagit; Kopf, Manfred; Moussaieff, Arieh; Abdeen, Suhaib K; Elinav, Eran.

Nature ; 624(7992): 645-652, 2023 Dec.

Article in English | MEDLINE | ID: mdl-38093014

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Personalized microbiome-driven effects of non-nutritive sweeteners on human glucose tolerance.

Epithelial Nlrp10 inflammasome mediates protection against intestinal autoinflammation.

Short-term dietary changes can result in mucosal and systemic immune depression.

Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome.

Diet Diurnally Regulates Small Intestinal Microbiome-Epithelial-Immune Homeostasis and Enteritis.

Lipid-Associated Macrophages Control Metabolic Homeostasis in a Trem2-Dependent Manner.

Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features.

Post-Antibiotic Gut Mucosal Microbiome Reconstitution Is Impaired by Probiotics and Improved by Autologous FMT.

Our Gut Microbiome: The Evolving Inner Self.

A microbial iron fist to fight tumors.

Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations.

The Spectrum and Regulatory Landscape of Intestinal Innate Lymphoid Cells Are Shaped by the Microbiome.

Epithelial IL-18 Equilibrium Controls Barrier Function in Colitis.

Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome.

Personalized Nutrition by Prediction of Glycemic Responses.

Microbiota-Modulated Metabolites Shape the Intestinal Microenvironment by Regulating NLRP6 Inflammasome Signaling.

The fire within: microbes inflame tumors.

Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis.

NLRP6 inflammasome orchestrates the colonic host-microbial interface by regulating goblet cell mucus secretion.

Lung dendritic-cell metabolism underlies susceptibility to viral infection in diabetes.